Laboratoire de Microbiologie Géochimie et Ecologie marine

1. Al Ali B., Garel M., Cuny Ph., Miquel JC., Toubal T., Robert A. and Tamburini C. (2010) Luminous bacteria in the deep-sea waters near the ANTARES underwater neutrino telescope (NW Mediterranean Sea). 26, n° 1, 57-72.

2. Burd A.B., Hansell D.A., Steinberg D.K., Anderson T.R., Aristegui J., Baltar F., Beaupré S.R., Buesseler K.O., DeHairs F., Jackson S.K., Kadko D.C., Koppelmann R., Lampitt R.S., Nagata T., Reinthaler T., Robinson C., Robison B.H., Tamburini C., Tanaka T. (2010) Assessing the Apparent Imbalance Between Geochemical and Biochemical Indicators of Meso- and Bathypelagic Biological Activity : What the @$# ! is wrong with present calculations of carbon budgets ? Deep Sea Research II, 57, 1557-1571.

3. Carlotti F. and Poggiale JC. (2010) Towards methodological approaches to implement the zooplankton component in “end to end” food-web models. Progress in Oceanography, vol. 84, 20 – 38.

4. Christodoulou S., Joux F., Marty J-C., Sempéré R., Rontani JF. (2010) Comparative study of UV and visible light induced degradation of lipids in non-axenic senescent cells of /Emiliania huxleyi/. _Mar. Chem_. (Sous presse).

5. Cook R.D., Forzani L., Yao A.F. (2010) Necessary and sufficient conditions for consistency of a method for smoothed functional inverse regression. Statistica Sinica, in press.

6. Dabo-Niang S., Yao AF., Pischedda L., Cuny Ph., Gilbert F. (2009) Spatial mode estimation for functional random fields with application to bioturbation problem. Stoc Environ Res Risk Assess, in pressdoi : 10.1007/s00477-009-0339-6.

7. Denis M., Thyssen M., Martin V., Manca B. and Vidussi F. (2010) Ultraphytoplankton basin-scale distribution in the eastern Mediterranean Sea in winter : link to hydrodynamism and nutrients. Biogeosciences, 7, 2227-2244.

8. Denis M., Thyssen M., Martin V., Manca B. and Vidussi F. (2010) Ultraphytoplankton winter distribution in the Eastern Mediteranean Sea. Biogeosciences Discuss, 6, 6839-6887.

9. Eichinger M., Sempéré R., Grégori G., Charrière B., Poggiale J-C. and Lefèvre D. (2010) Increased bacterial growth efficiency with environmental variability : results from DOC degradation by bacteria in pure culture experiments. Biogeosciences Discussions, 7, 787-822.

10. Fardeau ML., Barsotti V., Cayol JL., Guasco S., Michotey V., Bonin P., Ollivier B. (2010) Caldinitratiruptor microaerophils, gen. nov., sp. Nov. isolated from a French hot spring (Chaudes-Aigues, Massif Central) : a novel cultivated microaerophilic thermophilic anaerobe pertaining ti the Symbiobacterium branch within the low G+C Gram-positive bacteria. Extremophile. DOI 10.1007/s00792-010-0302-y.

11. Gaertner J.-C., Mérigot B., Rélini G., Bertrand J.A., Mazouni N., Politou C.-Y., , Gil de Sola L., Kallianiotis A., Carpentieri P., Murenu M., Durbec JP., Vrgoc N., N. Ungaro. (2010) Reproducibility of the multicomponent aspect of species diversity across different areas and scales : towards the constitution of a shortlist of complementary indices for monitoring fish diversity ? Ecography (in press, DOI : 10.1111/j.1600- 0587.2009.06259.x).

12. Grégori, G.,Denis, M.,Duhamel, S.,Van wambeke, F. (2010) Analysis of phosphatase activity from aquatic heterotrophic bacteria at the single cell level by flow cytometry : example of developement achieved in the Regional Flow Cytometry Platform for Microbiol. Proceedings of the CFJO (sous-presse)

13. Grossi V., Yakimov Michail M., Al Ali B., Tapilatu Y., Cuny Ph., Goutx Madeleine, La Cono Violette, Giuliano L. and Tamburini C. (2010) Hydrostatic pressure affects membrane and storage lipid compositions of the piezotolerant hydrocarbon-degrading Marinobacter hydrocarbonoclasticus strain 5. Environmental microbiology, 12 (7), 2020-2033.

14. Masmoudi S., Denis M., Maalej S., (2010) Inactivation of the gene katA or sodA affects the transient entry into the viable but non-culturable response of Staphylococcus aureus in natural seawater at low temperature. Marine Pollution Bulletin (in press) (doi.10.1016/j.marpolbul.2010.08.17).

15. Massarin S., Alonzo F., Garcia-Sanchez L., Gilbin R., Garnier-Laplace J., Poggiale J-C. (2010) Effects of chronic uranium exposure on life history and physiology of Daphnia magma over three successive generations. Aquatic Toxicology, 99, 309-319.

16. Mebarek, L.,Denis, M.,Grégori, G., (2010) A new method to measure prokaryote respiration at the single cell level by flow cytometry. Proceedings of the CFJO (sous-presse)

17. Mérigot B., Durbec JP., Gaertner JC. 2010. On goodness of fit measure for dendrogram-based analyses. Ecology, in press.

18. Michaud E., Aller R.C., Stora G., (2010) Sedimentary organic matter distributions, burrowing activity, and biogeochemical cycling : Natural patterns and experimental artifacts. Estuarine, Coastal and shelf Science, 90, 21-34.

19. Miralles G., Acquaviva M., Bertrand JC, Cuny P. (2010) Response of an archaeal community from anoxic coastal marine sediments to an experimental petroleum contamination. Aquatic Microbial Ecology, in press.

20. Nagata T., Tamburini C., Arístegui J., Baltar F., Bochdanskyd A., Fonda-Unami S., Fukuda H., Gogou A., Hansell. D.A, Hansman R. L., Herndl G., Panagiotopoulos C.., Reinthaler T., Sohrin R., Verdugo P., Yamada N., Yamashita Y., Yokokawa T., and D.H. Barlett. (2009) Emerging concepts on microbial processes in the bathypelagic ocean ecology biogeochemistry and genomis. Deep Sea Research II, 57, 1519-1536.

21. Nérini D., Monestiez P., Manté C. (2010) Cokriging for spatial functional data. Journal of Multivariate Analysis, 101, 409-418.

22. Perthame B., Gauduchon M. (2010) Survival thresholds and mortality rates in adaptive dynamics : conciliating deterministic and stochastic simulations. IMA Mathematical Medecine and Biology, in press. Doi  : 10.1093/inammb/dqp 018.

23. Poggiale JC., Baklouti M., Queguiner B. and Kooijma, S.A.L.M. (2010) How far details are important in ecosystem modelling : the case of multi-limiting nutrients in phytoplankton-zooplankton interactions. Philosophical Transactions of the Royal Society B, 365, 3495-3507.

24. Poisson F., Gaertner JC., Taquet M., Durbec JP., Bigelow K. 2010. Direct and derived effects of the lunar cycles on the catches of a monofilament longline gear and new insights for sustainable fishing strategies : the case of the Reunion Island swordfish fishery. Fishery Bulletin (sous presse)

25. Prahl FG., Rontani JF., Zabeti N., Walinsky SE., Sparrow MA (2010) Systematic pattern in U - Temperature residuals for surface sediments from high latitude and other oecanographic sttings. Geochimica et Cosmochimica Acta, 74, 131-143.

26. Robinson C., Steinberg D.K., Anderson T.R., Arístegui J., Carlson C.A., Frost JR, Ghiglione J.-F. Hernández- León S., Jackson G.A., Koppelmann R., Quéguiner B., Ragueneau O., Rassoulzadegan F., Robison B.H., Tamburini C, Tanaka T, Wishner K.F., Zhang J. (2010) Mesopelagic ecology and biogeochemistry – a synthesis. /Deep Sea Research II, 57, 1504-1518.

27. Rontani JF., Nassiry M., Michotey V., Guasco S. Bonin P. ( 2010) Formation of pristine from a-tocopherol under simulated anoxic sedimentary conditions : a combinaison of biotic and abiotic degradative processes. Geochimica et Cosmochimica Acta, 74, 252-263.

28. Sousa Tânia, Domingos Tiago, Poggiale JC. and Kooijman S.A.L.M. (2010) Dynamic energy budget theory restores coherence in biology. Philosophical Transactions of the Royal Society B, 365, 3413-3428.

29. Tapilatu Y., Acquaviva M., Guigue C ;, Miralles G., Bertrand J-C and P. Cuny (2010) Isolation of alkanedegrading bacteria from deep-sea Mediterranean sediments. Letters in Applied Microbiology, 50, 234-236.

30. Tapilatu Y., Grossi V., Acquaviva M., Militon C., Bertrand J-C & Cuny P. (2010) Isolation of hydrocarbondegrading extremely halophilic archaea from an uncontaminated hypersaling pond (Camargue, France). Extremophiles (in press).

31. Tedetti M., Guigue C., Goutx M. (2010) Utilization of a submersible UV fluorometer for monitoring anthropogenic inputs in the Mediterranean coastal waters. Marine pollution Bulletin, DOI 10.1016.

32. Tedetti M., Charrière B., Bricaud B., Raimbault P., Sempéré R. (2009) Distribution of normalized waterleaving radiances at UV and visible wave bands in relation with chlorophyll and colored detrital matter content in the South East Pacific. Journal of Geophysical Research, vol. 115, C02010, doi : 10.1029/2009JC005289.

33. Topcu, E.,Perez, T.,Grégori, G.,Harmelin, M. (2010) In situ investigation of Spongia officinalis (Demospongiae) particle feeding : coupling flow cytometry and stable isotope analysis. J. Exp. Mar. Biol. Ecol. Volume 389, Issues 1-2 : 61-69

34. ThyssenM., Beker B., Ediger D., Yilmaz D., Garcia N., Denis M., (2010) Phytoplankton distribution during two contrasted summers in a Mediterranean harbour : combining automated submersible flow cytometry with conventional techniques. EMAS (in press).

35. Urios L., Michotey V., Intertaglia L., Lesongeur F. and Lebaron Ph. (2010) Thalassobaculum salexigens sp. Nov., a new member of the family Rhodospirillaceae from the NW Mediterranean Sea, and emended description of the genus Thalassobaculum

36. Van Dijk M., Grégori G., Hoogveld H., Rijkeboer M., Denis M., Malkassian A., Gons M., (2010) Optimizing the setup of a flow cytometric celle sorter for efficient quantitative sorting of long filamentous cyanobacteria. Cytometry 77A : 911-924, 2010

37. Zhang FL., Yu-Zhang K., Zhao SJ., Xiao T., Denis M., Wu LF. (2010) Metamorphosis of Magnetospirillum magneticum sp. AMB-1 cells. Chinese Journal of Oceanology and Limnology, 28 : 1-6.