Laboratoire de Microbiologie Géochimie et Ecologie marine

1. Andersen V., Goutx M., Prieur L., Dolan JR. (2009) Short-scale temporal variability of physical, biological and biogeochemical processes in the NW Mediterranean Sea : an introduction, Biogeosciences (sous presse).

2. Borin S., Brusetti L., Mapelli F., D’auria G., Brusa T., Marzorati M., Rizzi A., Yakimov M., Marty D., De Lange G.J., Van der Wielen P., Bolhuis H., McGenity T.J., Polymenakou P.N., Malinverno E., Giuliano L., Corselli C. and Daffonchio D. (2009) Sulfur cycling and methanogenesis primarily drive microbial colonization of the highly sulfific Urania deep hypersaline basin. Environmental Sciences PNAS, 126, n° 23, 9151-9156.

3. Bourguet N, Goutx M, Ghiglione JF, Pujo-Pay M, Mével G, Momzikoff A, Mousseau L, Guigue C, Garcia N., Raimbault P, Pete R, Oriol L, Lefèvre D. (2009). Lipid biomarkers and bacterial lipase activities as indicators of organic matter and bacterial. dynamics in contrasted regimes at the Dyfamed site, NW Mediterranean. /Deep–Sea Research II 56, 1454-1469.

4. Carlotti F. and Poggiale JC. (2009) Towards methodological approaches to implement the zooplankton component in “end to end” food-web models. Progress in Oceanography (sous presse).

5. Charpy, L.,Grégori, G.,Rodier, M., (2009) Le picoplancton photosynthétique. Dans : Clipperton, environnement et biodiversité d’un microcosme océanique. CPN 68. Etienne J.L., Ed : 83-88. ISBN : 978-2-7099-1660-8.

6. Christodoulou S., Marty J-C., Miquel J-C., Volkman J.K., Rontani JF. (2009) Use of lipids and their degradation products as biomarkers for carbon cycling in the north-western Mediterranean Sea. Marine Chemistry, 113, 25-40.

7. Dabo-Niang S., Yao AF., Pischedda L., Cuny Ph., Gilbert F. (2009) Spatial mode estimation for functional random fields with application to bioturbation problem. Stoc Environ Res Risk Assess.

8. Demongeot J., Françoise JP. and Nérini D. (2009) From biological and clinical experiments to mathematical models. Philosophical Transactions of the Royal Society A, 367, 4657-4663.

9. Duflos M., Goutx M., Van Wambeke F. (2009). Determination of lipid degradation by marine lipase-producing bacteria : critical evaluation of lipase activity assays. Lipids, 44, 1113-1124.

10. Duhamel S., Grégori G., Van Wambeke F., Nedoma J., (2009) Detection of Extracellular Phosphatase Activity at the Single-Cell level by Enzyme-Labeled Fluorescence and Flow Cytometry : the Importance of Time Kinetics in ELFA Labeling, Cytometry Part A., 75A, 163-168.

11. Eichinger M., Kooijman S.A.L.M., Sempéré R., Lefèvre D., Grégori G., Charrière B., Poggiale JC, (2009). Consumption and release of dissolved organic carbon by marine bacteria in a pulsed-substrate environment : from experiments to modelling, 56, 41-54.

12. Gagnoud M., Lajeunesse P., Desrosiers G., Long B., Dufour S., Labrie J., Mermillod-Blondin F. Stora G., (2009). Litho-and biofacies analysis of postglacial marine mud using CT-Scanning. Engineering Geology 103, 106-111.

13. Goutx M., Guigue C., Aritio D., Ghiglione JF., Pujo-Pay M., Andersen V., (2009). Short term variability of dissolved lipid classes during summer to autumn transition in the Ligurian Sea (NW Mediterranean), Biogeosciences, 6, 27-69.

14. Goutx M., Guigue C., Aritio D., Ghiglione JF., Pujo-Pay M., Raybaud V., Duflos M. and Prieur L. (2009) Short term summer to autumn variability of dissolved lipid classes in the Ligurian sea (NW Mediterranean). Biogeosciences, 6, 1229-1246.

15. La Cono V., Tamburini C., Denaro R., Giuliano L., Yakimov M., (2009) Cultivation-independent assessment of the bathypelagic archaeal diversity of Tyrrhenian Sea : Comparative study of rDNA and rRNA-derived libraries and influence of sample decompression. Deep-Sea Research II 56 (11-12), 768-773.

16. Lagauzère S., Pischedda L., Cuny Ph., Gilbert F., Stora G., Bonzom JM. (2009) Influence of Chironomus riparius (Diptera, Chironomidae) and Tubifex tibifex (Annelida, Oligochaeta) on oxygen uptake by sediments. Consequences of uraniumù contamination. Environmental Pollution, 157, 1234-1242.

17. Lagauzère S., Boyer P., Stora G., Bonzom J.M. (2009) Effects of uranium-contaminated sediments on the bioturbation activity of Chironomus riparius larvae (Insecta, Diptera) and Tubifex tubifex worms (Annelida, Tubificidae). Chemosphere, 76, 324-334

18. Lee C., Armstrong R.A., Cochran J.K., Engel A., Fowler S., Goutx M., Masqué P., Miquel J-C., Peterson M., Tamburini C., Wakeham S., (2009) Medflux : Investigations of particule flux in the Twilight zone, Deep Sea research II, 56 (18), 136361368.

19. Lee C., Armstrong R.A., Cochran J.K., Engel A., Fowler S., Goutx M., Masqué P., Miquel J.C., Peterson M., Tamburini C., Wakeham S., (2009) Medflux : Investigations of particule flux in the Twilight zone, Deep Sea research 2, doi:10.1016/j.dsr2.2008.12.003.

20. Mallet M., Chami M., Gentili B., Sempéré R. and Dubuisson P. (2009) Impact of sea-surface dust radiative forcing on the oceanic primary production : A 1D modeling approach applied to the West Africa coastal waters. 36, L15828, 1-6.

21. Marty JC., Goutx M., Guigue C., Leblond N., Raimbault P., (2009). Short-term changes in particulate fluxes measured by drifting sediment traps during end summer oligotrophic in the NW Mediterranean Sea, Biogeosciences, 6, 887-899.

22. Mérigot B. (2009) Multi-components analysis of species diversity : applications to marine settlments. Cybium, 32 : 265-269.

23. Minjeaud L., Michotey V., Garcia N., Bonin P. (2009) Seasonal variation in di-nitrogen fluxes and associated processes (denitrification, anammox

24. Moriceau B., Goutx M., Guigue C., Lee C., Armstrong R., Duflos M., Tamburini C., Charrière B., Ragueneau O., (2009). Si-C interactions during degradation of the diatom /Skeletonema marinoi/. Deep Sea Research II 56, 1381-1395.

25. Nassiry M., Aubert, C., Mouzdahir A., Rontani J-F. (2009) Generation of isoprenoid compounds and notably of prist-1-ene through photo- and autoxidative degradation of vitamin E. Organic Geochemistry 40 : 38-50.

26. Poggiale JC., Auger P., Cordoléani F. and Nguyen-Huu T. (2009) Study of a virus-bacteria interaction model in a chemostat : application of geometrical singular perturbation theory. Philosophical transactions of the Royal Society, 367, 4685-4697.

27. Reverdin G., Lévy M., Raimbault P. and Lefèvre D. (2009) Nutrients in mode waters of the northeast Atlantic. Journal of Geophysical research, vol. 114, C10004.

28. Rontani J-F., Zabeti N., Wakeham S.G. (2009) The fate of marine lipids : biotic vs. abiotic degradation of particulate sterols and alkenones in the Northwestern Mediterranean Sea. Marine Chemistry, 113, 9-18.

29. Rontani JF., Zabeti N. and Aubert C. (2009) Double Bond Migration to Methylidene Positions During Electron Ionization Mass Spectrometry of Branched Monounsaturated Fatty Acid Derivatives. American Society for Mass Spectrometry. DOI 10.1016.

30. Tamburini C., Garel M., Al Ali B., Mérigot B., Kriwy P., Charrière B., Budillon G., (2009) Distribution and activity of Bacteria and Archaea in the different water masses of the Tyrrhenian Sea. Deep Sea Research II 56, 700-712.

31. Tamburini C., Goutx M., Guigue C., Garel M., Lefèvre D., Charrière B., Sempéré R., Pepa S., Peterson, M.L., Wakeham, S., Lee, C., (2009) Effects of hydrostatic pressure on microbial alteration of sinking fecal pellets. Deep-Sea Research II 56, 1533-1546.

32. Tamburini C, Goutx M, Guigue C, Garel M, Lefèvre D, Charrière B, Sempéré R, Pepa S, Peterson ML, Wakeham S, Lee C. (2009). Novel technique to simulate particles falling through the water column : evaluation of pressure effects on organic matter mineralization by prokaryotes. Deep-Sea Research II, doi:10.1016/j.dsr2.2008.12.035.

33. Tedetti, M., Joux, F.,Charrière, B., Mopper, K., Sempéré, R., (2009). Contrasting effects of solar radiation and nitrates on the bioavailability of DOM to marine bacteria./ Journal of Photochemistry and Photobiology A : Chemistry, 201 (2009), 243-247.

34. Uitz J., Claustre H., Brian Griffiths F., Ras J., Garcia N., Sandroni V., (2009) A phytoplankton class-specific primary production model applied to the Kerguelen Islands region (Southern Ocean). Deep-Sea research I, 56, 541-560.

35. Van Wambeke F., Tedetti M., Duhamel S., Sempéré R., (2009) Diel variability of heterotrophic bacterial production and underwater UV doses in the eastern South Pacific. Marine Ecology Progress Series, vol. 387, 97-108.

36. Van Wambeke F., Ghiglione JF., Nedoma J. Mével G and Raimbault P. (2009) Bottom up effects on bacterioplankton growth and composition during summer-autumn transition in the open NW Mediterranean Sea. Biogeosciences, 6, 705-720.