Laboratoire de Microbiologie Géochimie et Ecologie marine

1. Abboudi, M., Mattalana, S., Rontani, J., Sempéré, R., Joux, F., (2008) /Physiological Alteration of the Marine Bacterium Vibrio angustum S14 Exposed to Simulated Sunlight During Growth./ Cur. Microbiol., 10.1007/s00284-008-9214-9.

2. Auger, P.,Bravo, R.,Poggiale J.C., Sanchez, E.,Sanz, L., (2008). Aggregation methods in dynamical systems and applications in population and community dynamics. Physics of Life Review, 5, 79-105.

3. Auger, P., Bravo de la Parra, R., Poggiale J.C., Sanchez, E. and Nguyen-Huu, T. (2008). « Aggregation of Variables and Applications to Population Dynamics ». In_Structured Population Models in Biology and Epidemiology.

4. Belviso S., Bopp L., Mosseri J., Tedetti M., Garcia N., Griffiths B., Joux F., Obernosterer I., Uitz J., Veldhuis M. (2008). Effect of natural iron fertilisation on the distribution of DMS and DMSP in the Indian sector of the Southern Ocean. Deep-Sea Research II (55) : 893-900.

5. Biegala IC, Raimbault P. (2008) High abundance of diazotrophic picocyanobacyeria (<3µm) in a Southwest Pacific coral lagoon. Aquatic Microbial Ecology, 51, 45-53.

6. Bigot L., Grémare A., Amouroux J.M., Frouin P., Maire O., Gaertner J.C. (2008). Assessment of the ecological quality status of soft-bottoms in Réunion Island (tropical Southwest Indian Ocean) using AZTI Marine Biotic Indices. Marine Pollution Bulletin (56) 4 : 704-722.

7. Bonilla-Findji O., Malits A., Lefèvre D.,Rochelle-Newall E., Lemée R., Weinbauer M.G., Gattuso JP., (2008) Viral effects on bacterial respiration, production and growth efficiency : consistent trends in the Southern Ocean and the Mediterranean Sea. Deep-Sea ResearchII, 55, 790-800

8. Bonnet S, Guieu C, Bruyant F, Prasil O, Van Wambeke F, Raimbault P, Moutin T, Grob C, Gorbunov MY, Zehr JP, Masquelier SM, Garczareck L, Claustre H. 2008. Nutrient limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise). Biogeosciences, 5 : 215-225.

9. Carlotti F., Thibault-Botha D., Nowaczyk, Lefèvre D., (2008) Zooplankton community structure, biomass and role in carbon fluxes during the second half of a phytoplankton bloom in the eastern sector of the Kerguelen Shelf (January-February 2005), Deep-Sea Research II, 55, 720-733.

10. Christaki U, Obernosterer I, Van Wambeke F, Veldhuis M, Garcia N, Catala P. (2008). Microbial food web structure in a naturally iron fertilized area Southern Ocean (Kerguelen Plateau). Deep Sea Research II, 55:706-719.

11. Correia C., Besson S., Brondino C.D., Gonzalez P.J., Fauque G., Lampreia J., Moura J., Moura J.J.G. Biochemical and spectroscopic characterization of the membrane-bound nitrate reductase from Marinobacter hydrocarbonoclasticus 617. Journal of Biological Inorganic Chemistry (2008), 13,1321-1333.

12. Danovaro R., Dell’Anno A., Corinaldesi C., Magagnini M., Noble R., Tamburini C., Weinbauer M. (2008). Major viral impact on the functioning of benthic deep-sea ecosystems. Nature, 454 (7208) : 1084-1087.

13. de Mesmay R., Metzger P., Grossi V., Derenne S. (2008). Mono- and dicyclic unsaturated triterpenoid hydrocarbons from sediments of Lake Masoko (Tanzania) widely extending the botryococcene family. Organic Geochemistry. in revision

14. Duhamel S, Gregori G, Van Wambeke F, Mauriac R, Nedoma J. (2008). A method for analysing phosphatase activity in aquatic bacteria at the single cell level using flow cytometry. Journal of Microbiological Methods, 75 : 269-278.

15. Gaertner J.C., Taquet M., Dagorn L., Mérigot B., Aumeeruddy R., Sancho G., Itano D., 2008. Visual censuses around drifting fish aggregating devices (FADs) : a new approach for assessing the diversity of fish in open-ocean waters. Marine Ecology Progress Series, 366 : 175-186.

16. Ghiglione JF., Palacios C., Marty JC., Mével G., Labrune C., Conan P., Pujo-Pay M., Garcia N., Goutx M.. (2008). Role of environmental factors for the vertical distribution (0-1000 m) of marine bacterial communities in the NW Mediterranen Sea. Biogeosciences,5, 1751-1764.

17. Gouze E., Raimbault. P., Garcia N., Picon P., Bernard G., 2008 Nutrient dynamics and primary production in the eutrophic Berre Lagoon (Mediterranean, France). Transitional Waters Bulletin, 2(2008), 17-4.

18. Gouze E., Raimbault. P., Garcia N., Bernard G, Picon P., 2008 Nutrients and suspended matter discharge by tributaries to the Berre Lagoon (France) : floods contribution to matter budget. C.R. Geosciences, 340 : 233-244. 19. Haouri O., Fardeau M.L., Cayol J.L., Fauque G., Casiot C., Elbaz-Poulichet F.,Hamdi M., Ollivier B. Thermodesulfovibrio hydrogenophilus sp. nov., a new thermophilic sulphate-reducing bacterium isolated from a Tunisian hot spring. Systematic and Applied Microbiology (2008), 31, 38-42.

20. Karayanni H, Christaki U, Van Wambeke F, Thyssen M, Denis M. (2008). Heterotrophic nanoflagellate and ciliate bacterivorous activity and growth in oceanic waters : a seasonal study at mesoscale in NE Atlantic. Aquatic Microbial Ecology, 51:169-181.

21. Lefèvre D., Guigue C., Obernosterer Ingrid (2008) The metabolic balance at two contrasting sites in the Southern Ocean : The iron-fertilized Kerguelen area and HNLC waters. Deep-Sea Research II, 55, 766-776.

22. Letourneur Y., Gaertner J.C, Durbec J.P, Jessu M.E. (2008). Effects of geomorphological zones, reefs and seasons on coral reef fish communities of Réunion Island, Mascarene Archipelago, SW Indian Ocean. Estuarine, Coastal and Shelf Science (77) : 697-709.

23. Marty JC, Garcia N., Raimbault P. (2008) Phytoplankton dynamics and primary production under late summer conditions in the NW Mediterranean Sea. Depp-Sea research I, 55, 1131-1149.

24. Mermillod F.,Poggiale J.C.,Tolla C.,Thuillier W.,Auger, P.,Creuze M. (2008). Modelling the impact of tubicid worms (Oligochaeta) on oxygen concentrations in hyporheic sediments : importance of vertical distributions. Fundamentals and Applied Limnology, 172 (2), 135-145.

25. Mével G., Vernet M., Goutx M., Ghiglione JF., (2008). Seasonal to hour variation scales in abundance and production of total and particule-attached bacteria in the open NW Mediterranean Sea (0-1000 m). Biogeosciences, 5, 1573-1586.

26. Minjeaud, L., Bonin, P., Michotey, V. (2008) Nitrogen fluxes from marine sediments : quantification of the associated co-occurring bacterial processes. Biogeochemistry, 90, 141-157.

27. Nogaro G., Charles F., Braga de Mendonça J. J., Mermillod-Blondin F., Stora G., François-Carcaillet F. (2008). Food supply impacts sediment reworking by Nereis diversicolor. Hydrobiologia, 598, 403-408.

28. Obernosterer I, Christaki U, Lefèvre D, Catala P, Van Wambeke F, Lebaron P. (2008). Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean. Deep Sea Research II, 55:777-789.

29. Obernosterer I, Catala P, Lami R, Caparros J, Ras J, Bricaud A, Dupuy C, Van Wambeke F, Lebaron P. (2008). Biochemical characteristics and bacterial community structure of the sea surface microlayer in the South Pacific Ocean. Biogeosciences, 5 : 693-705.

30. Piot A., Rochon A., Stora G., Desrosiers G., (2008). Experimental study on the influence of bioturbation performed by Nephtys caeca (Fabricius) and Neres virens (Sars) annelidae on the distribution of dinoflagellate cysts in the sediment. Journal of experimental Marine Biology and Ecology, 359, 92-101.

31. Pischedda L., Poggiale J.C., Cuny P.,Gilbert, F., (2008) Imaging Oxygen Distribution in Marine Sediments. The Importance of Bioturbation and Sediment Heterogeneity. Actabiotheoretica, 56, 123-135.

32. Poggiale J.C., ,Gauduchon M., Auger P., (2008). Enrichment Paradox Induced by Spatial Heterogeneity in a Phytoplankton - Zooplankton System. Mathematical Models of Natural Phenomena, 3 (3), 87-102.

33. Raimbault P., Garcia N., F. Cerrutti, 2008. Distribution of inorganic and organic nutrients in the South Pacific Ocean. Evidence for long-term accumulation of organic matter in nitrogen-depleted waters. Biogeosciences, 5, 281-298.

34. Raimbault P., Garcia N. (2008). Evidence for efficient regenerated production and dinitrogen fixation in nitrogen-depleted waters of the South Pacific Ocean : Impact on new and export production estimates. Biogeosciences., 5, 323-338.

35. Rakotomalala L., Studach L., Wang W., Grégori G., Hullinger R.L., Andrisani O. (2008) Hepatitis B virus X protein increases the Cdt 1 to geminin ratio inducing DNA re-replication and polyploidy. J. Biol. Chem. Vol.283, Issue 42, 28729-28740, 2008 ;

36. Rontani J-F. (2008) Photooxidative and autoxidative degradation of lipid components during the senescence of phototrophic organisms. Phytochemistry Research Progress, Nova Science Publishers, ISBN 978-1-60456-232-3.

37. Rontani J-F., Nassiry M., Guasco S., Mouzdahir A. and Bonin P. (2008) Aerobic metabolism of vitamin E by marine bacteria : interactions with free radical oxidation (autoxidation) processes. Org. Geochem., 39 (2008) 676-688.

38. Rontani J-F., Aubert C. (2008) Hydrogen and trimethylsilyl transfers during EI mass spectral fragmentations of hydroxycarboxylic and oxocarboxylic acid trimethylsilyl derivatives. Journal of the American Society of Mass Spectrometry 19 : 66-75.

39. Rontani J-F., Harji R., Guasco S., Prahl F.G., Volkman J.K., Bhosle N.B. et Bonin P. (2008) Degradation of alkenones by aerobic heterotrophic bacteria : selective or not ? Organic Geochemistry 39 : 34-51.

40. Rontani J-F. et Wakeham S.G. (2008) Alteration of alkenone unsaturation ratio with depth in Black Sea : potential roles of stereomutation and aerobic biodegradation. Organic Geochemistry 39 : 1259-1268.

41. Rontani J-F., Koblizek M. (2008) Regiospecific Enzymatic Oxygenation of cis-Vaccenic Acid in the Marine Phototrophic Bacterium Erythrobacter sp. strain MG3. Lipids 43 : 1065-1074.

42. Rontani J-F. (2008) Production of wax esters by bacteria. Dans : Microbiology of Hydrocarbons, Oils, Lipids and derived compounds, K. Timmiz (Ed.), Springer Verlag (Sous presse)

43. Sempéré R, Tedetti M, Panagiotopoulos C, Charrière B, Van Wambeke F. (2008). Distribution and bacterial availability of dissolved neutral sugars in the South East Pacific. Biogeosciences, 5 : 1165-1173.

44. Thyssen M., Tarran G.A., Zubkov M., Holland R.J., Gregori G., Burkill P.H., Denis M. (2008) The emergence of automated high frequency flow cytometry : revealing temporal and spatial phytoplankton variability. Journal Plankton Res 30 (3), 333-343.

45. Thyssen M., Mathieu D., Garcia N., Denis M. (2008). Short-term variation of the phytoplankton assemblage in the bay of Marseille (France) monitored by in situ flow cytometry. Journal of Plankton Research, 30 : 1027 - 1040.

46. Tolosa I., Miquel JC., Gasser B., Raimbault P., Goyet C. and Claustre H. (2008) Distribution of lipid biomarkers and carbon isotope fractionation in contrasting trophic environments of the South East Pacific. Biogeosciences, 5, 949-968.

47. Urios, L., Michotey, V., Intertaglia, L., Lesongeur, F., Lebaron, P.(2008) Nisaea denitrificans gen. nov., sp. nov. and Nisaea nitritireducens sp. nov., two novel members of the class Alphaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol. 58:2336-2341.

48. Van Mooy B.A.S., Moutin T., Duhamel S., Rimmelin P. and Van Wambeke F. (2008). Phospholipid synthesis rates in the eastern subtropical South Pacific Ocean, Biogeosciences, 5, 133-139.

49. Van Wambeke F, Obernosterer I, Moutin T, Duhamel S, Ulloa O, Claustre H. 2008. Heterotrophic bacterial production in the eastern South Pacific : longitudinal trends and coupling with primary production. Biogeosciences, 5 : 157-169.

50. Van Wambeke F, Bonnet S, Moutin T, Raimbault P, Alarçon G, Guieu C. 2008. Factors limiting heterotrophic bacterial production in the southern Pacific Ocean. Biogeosciences, 5 : 833-845.

51. Van Wambeke F, Nedoma J, Duhamel S, Lebaron P. (2008). Alkaline phosphatase activity of marine bacteria studied with ELF97 substrate : success and limits in the P-limited Mediterranean Sea. Aquatic Microbial Ecology, 52 : 245-251.

52. Williams P.J le B., Lefèvre D. (200)8. An assessment of the measurement of phytoplankton respiration Rates from dark 14C Incubations. Limnology and Oceanography Methods. 6:1-11.