Laboratoire de Microbiologie Géochimie et Ecologie marine

1› Blatchley E., Shen, Naunovic Z., Lin L.S., Lyn D.A., Robinson J. P., Ragheb K., Gregori G., Bergstrom D., Fang S., Jennings K., Gunaratna N. (2006). Photochemical reactor characterization by Lagrangian actinometer. Journal of Environmental Engineering, ASCE. (in press).

2› Robinson J. Paul, Gregori G. (2006). Principles of Flow Cytometry. In /Flow Cytometry with Plant Cells/. Dolezel, Greilhuber, Suda (Eds.). In press

3› Venkatapathi M., Gregori G., Ragheb K., Robinson J.P, Hirleman E.D. (2006). Measurement and analysis of angle resolved scatter from small particles in a micro-channel. Applied Optics (in press).

4› Bernas T, Gregori G, Asem EK, and Robinson JP (2006). Integrating cytomics and proteomics. MCP published October 28, 2005, 10.1074/mcp.R500014-MCP200. (in press)

5› Rontani J-F., Prahl F.G. et Volkman J.K. (2006) Characterization of unusual alkenones and alkenoates by impact ionization gas chromatography/mass spectrometry. Rapid Commun. Mass Spectrom., 20 : 583-588.

6› Tamburini C. (2006). Life under pressure. Deep-sea microbial ecology. In : Life as we know it. Series : Cellular Origin and Life in Extreme Habitats and Astrobiology. J. Seckbach Ed. Springer, Dordrecht, The Netherlands , 650 pp.

7› D. Daffonchio, S. Borin, T. Brusa, L. Brusetti, P.W.J.J. van der Wielen, H. Bolhuis, G. DAuria, M.M. Yakimov, L. Giuliano, D. Marty, C. Tamburini, T.J. McGenity, J.E. Hallsworth, A.M. Sass, K.N. Timmis, A. Tselepides, G.J. de Lange, A. Hubner, J. Thomson, S.P. Varnavas, F. Gasparoni, H.W. Gerber, E. Malinverno, C. Corselli & Biodeep Scientific Party (2006). Stratified prokaryote network in the oxic-anoxic transition of a deep sea halocline. Nature. 440 (7081) : 203-207. First page

8› Grossi V., Cuny P., Caradec S., Nerini D., Pancost R. & Gilbert F. (2006). Impact of feeding by Arenicola marina (L.) and ageing of faecal material on fatty acid distribution and bacterial community structure in marine sediments : an experimental approach. Journal of Experimental Marine Biology and Ecology, 336 : 54-64.

9› Jean-François Rontani, Jean-Claude Marty, Juan-Carlos Miquel and John K. Volkman (2006) Free radical oxidation (autoxidation) of alkenones and other microalgal lipids in seawater. Organic Geochemistry, 37 : 354-368.

10› Aguilar JA, ... , Tamburini C, ..., Yao A-F, ... (2006) First results of the Instrumentation Line for the deep-sea ANTARES neutrino telescope. Astroparticle Physics 26:314-324. Abstract.

11› Ollivier B., Cayol J.-L. and Fauque G. (2006). Sulphate-reducind bacteria from oil fields environments and deep-sea hydrothermal vents. In “Sulphate-Reducing Bacteria : Environmental and Engineered Systems” (L. Barton and W. Hamilton, Eds), Chapter 9, Cambridge University Press, London, in press.

12› R. Mchich, P. Auger, J.-C. Poggiale (2006). Effect of predator density dependent dispersal of prey on stability of a predator-prey system, Mathematical Biosciences, in press

13› T. Nguyen-Huu, C. Lett, J.C. Poggiale and P. Auger (2006) .Effect of movement frequency on global host-parasitoid spatial dynamics with unstable local dynamics , Ecological Modelling, in press

14› P. Auger, B.W.Kooi, R. Bravo de la Parra, J.-C. Poggiale (2006), Bifurcation analysis of a predator-prey model with predators using hawk and dove tactics, Journal of Theoretical Biology, 238, 597-607

15› Monestiez, P., Dubroca, L. ,Bonin, E. , Durbec, J.P., Guinet, C. (2006) Geostatistical modelling of spatial distribution of balenoptera physallus in the northwestern mediteranean sea from sparse count data and heterogeneous efforts. Ecological modelling, in press.

16› F.A. Agung, B.A. Nicolas, D. Nerini, J-C. Bertrand, M. Guiliano, P. Doumenq. (2006). Phospholipid fatty acids of a marine sedimentary microbial community in a laboratory microcosm : responses to petroleum hydrocarbon contamination. Organic Geochemistry, in press.

17› Duport E., Stora G., Tremblay P. & Gilbert F. (2006). Effects of population density on the sediment mixing induced by the gallery-diffusor Hediste (Nereis) diversicolor O.F. Müller, 1776. Journal of Experimental Marine Biology and Ecology, 336 : 33-41.

18› Duport E., Gilbert F., Poggiale J-C., Dedieu K., Rabouille C. & Stora G. Benthic macrofauna and sediment reworking quantification in contrasted environment in the Thau Lagoon. Estuarine, Coastal and Shelf Science - special issue"Microbent", in press.

19› Schmidt S., Jouanneau J-M., Weber O., Lecroart P., Radakovitch O., Gilbert F. & Didier Jezequel D. Sediment dynamic at the water-sediment interface of the Thau Lagoon (South France) : from seasonal to century time scales using radiogenic and cosmogenic nuclides. Estuarine, Coastal and Shelf Science - special issue"Microbent", in press.

20› Mante C. Application of resampling and linear spline methods to spectral and dispersional analyses of long-memory processes. Computational Statistics & Data Analysis, sous presse.

21› Eichinger, M., Poggiale, J.C., Van wambeke, F., Lefevre, D., Sempere, R. (2006) Modeling DOC assimilation and bacterial growth efficiency in dilution cultures : a case study in the Northeast Atlantic Ocean./ Aquatic Microbial Ecology, 43 : 139-151.

22› Tedetti, M., Sempere, R. (2006) Penetration of UV radiation in the marine environment : A review. Photochemistry and Photobiology, 82, pp. 389–397.

23› Sempere, R. ,Tedetti, M., Charriere, B., Abboudi, M., (2006) Ultra-violet radiation may affect bacterial cycling of dissolved organic matter in the Mediterranean Sea : A review. CIESM, Production and fate of dissolved organic matter in the Mediterranean Sea. CIESM Workshop Monographs, 85-87, n°28, 128 pp.

24› Tedetti, M.,Kawamura, K.,Charriere, B.,Chevalier, N.,Sempere, R. (2006). Determination of Low Molecular Weight Dicarboxylic and Ketocarboxylic Acids in Seawater Samples. Analytical Chemistry (78) : 6012-6018.

25› Cuny P., Miralles G., Cornet-Barthaux V., Acquaviva M., Stora G., Grossi V. & Gilbert F. Influence of bioturbation by the polychaete Nereis diversicolor on the structure of bacterial communities in oil contaminated coastal sediments. Marine Pollution Bulletin, in press.

26› Rabouille C., Amouroux D., Anschutz P., Gilbert F., Prévôt F., Jouanneau J-M. & Cossa D. Biogeochemical and contaminant cycling in sediments from a human-impacted coastal lagoon. Estuarine, Coastal and Shelf Science - special issue"Microbent", in press.

27› Nerini D., B. Ghattas (2006). Classifying densities using functional regression trees : Application in oceanology. Computational Statistics And Data Analysis, sous presse.

28› Mante, C., Yao A.F. and Degiovanni, C. (2006) Principal Component Analysis of measures, with special emphasis on grain-size curve. Computational Statistics & Data Analysis, sous presse.

29› Dabo-Niang, S. and Yao, A.F. (2006) Spatial Kernel Density and Regression Estimation for Spatial Processes. Mathematical Methods of Statistics, soumis.

30› Tamburini C., Garcin J., Gregori G., Leblanc K., Rimmelin P., Kirchman D.L. (2006). Pressure effects on surface Mediterranean prokaryotes and biogenic silica dissolution during a diatom sinking experiment. Aquatic Microbial Ecology 43(3) : 267-276. Full text in pdf format .

31› E. Michaud, G. Desrosiers, F. Mermillod-Blondin, B. Sundby & G. Stora (2006) The functional group approach to bioturbation : II. The effects of the Macoma balthica community on fluxes of nutrients and dissolved organic carbon across the sediment-water interface. Journal of Experimental Marine Biology and Ecology, 337 : 178-189.

32› Samer Sakr, Melilotus Thyssen, Michel Denis, and Cheng-Cai Zhang (2006) Relationship among Several Key Cell Cycle Events in the Developmental Cyanobacterium Anabaena sp. Strain PCC 7120. J. Bacteriol. 188 : 5958-5965.

33› Gaëtan Gogniat, Melilotus Thyssen, Michel Denis, Cesar Pulgarin & Sam Dukan (2006) The bactericidal effect of TiO2 photocatalysis involves adsorption onto catalyst and the loss of membrane integrity. FEMS Microbiology Letters, 258 : 18-24.

34› Murugesan Venkatapathi, Gérald Grégori, Kathy Ragheb, J. Paul Robinson, and E. Dan Hirleman (2006) Measurement and analysis of angle-resolved scatter from small particles in a cylindrical microchannel. Applied Optics, Vol. 45, pp. 2222-2231.

35› Jean-François Rontani, Patricia Bonin, Fredrick G. Prahl, Ian D. Jameson and John K. Volkman (2006) Experimental and field evidence for thiyl radical-induced stereomutation of alkenones and other lipids in sediments and seawater. Organic Geochemistry, 37, 1489-1504.

36› Tri Nguyen-Huu, Christophe Lett, Pierre Auger and Jean-Christophe Poggiale (2006) Spatial synchrony in host–parasitoid models using aggregation of variables. Mathematical Biosciences, sous presse

37› Tytus Bernas, Gérald Grégori, Eli K. Asem and J. Paul Robinson (2006) Integrating Cytomics and Proteomics. Molecular & Cellular Proteomics 5:2-13.

38› Bonin P, Michotey V (2006) Nitrogen budget in a microbial mat of Camargue (South of France). Marine Ecology Progress Series, sous presse.

39› Jean-François Rontani, Fredrick G Prahl, John K Volkman (2006) Re-examination of the double bond positions in alkenones and derivatives : biosynthetic implications. Journal of Phycology 42 : 800-813.

40› Alejandro López-Cortés, Sergey Bursakov, Angelo Figueiredo, Anders E. Thapper, Smilja Todorovic, José J. G. Moura, Bernard Ollivier, Isabel Moura, and Guy Fauque (2006) Purification and Preliminary Characterization of Tetraheme Cytochrome c3 and Adenylylsulfate Reductase from the Peptidolytic Sulfate-Reducing Bacterium Desulfovibrio aminophilus DSM 12254. Bioinorganic Chemistry and Applications, 3 : 81-91

41› Alejandro López-Cortés, Marie-Laure Fardeau, Guy Fauque, Catherine Joulian and Bernard Ollivier (2006) Reclassification of the sulfate- and nitrate-reducing bacterium Desulfovibrio vulgaris subsp. oxamicus as Desulfovibrio oxamicus sp. nov., comb. nov. Int J Syst Evol Microbiol, 56 : 1495-1499.

42› Anders Thapper, Maria G. Rivas, Carlos D. Brondino, Bernard Ollivier, Guy Fauque, Isabel Moura and José J.G. Moura (2006) Biochemical and spectroscopic characterization of an aldehyde oxidoreductase isolated from Desulfovibrio aminophilus. Journal of Inorganic Biochemistry, 100 : 44-50.

43› Fredrick G. Prahl, Jean-François Rontani, John K. Volkman, Margaret A. Sparrow and Ida M. Royer (2006) Unusual C35 and C36 alkenones in a paleoceanographic benchmark strain of Emiliania huxleyi. Geochimica et Cosmochimica Acta, 70 : 2856-2867.

44› Pierre Auger, Jean-Christophe Poggiale (2006) Mathematical modelling is a necessary step in biology and in environmental sciences. Comptes rendus Geoscience, 338 : 223-224.

45› Aguilar et al., ANTARES collaboration (with C. Tamburini, A.F. YAO) (2006). First results of the Instrumentation Line for the deep-sea ANTARES neutrino telescope. Astroparticle Physics 26:314-324.