Laboratoire de Microbiologie Géochimie et Ecologie marine

1› Deschênes, J., Desrosiers, Ferron, J., Cloutier, R., Stora, G. (2005) Environmental influence on activity levels and behavioural allocation in the polychaete Nereis virens (Sars). Journal of Experimental Marine Biology and Ecology 317, 203–212

2› Hulth, S., Aller, R.C., Canfield, D.E., Dalsgaard, T., Engström, P., Gilbert, F., Sundbäck, K., Thamdrup, B. (2005) Nitrogen removal in marine environments : recent findings and future research challenges. Marine Chemistry 94, 125-145

3› Rontani J-F. et Aubert C. (2005) Characterization of isomeric allylic diols resulting from chlorophyll phytyl side-chain photo- et autoxidation by EI gas chromatography/mass spectrometry. Rapid Commun. Mass Spectrom. 19 : 637-646.

4› Rontani J-F. et Volkman J.K. (2005) Lipid characterisation of coastal hypersaline cyanobacterial mats from the Camargue (France). Org. Geochem. 36 : 251-272.

5› Rontani J-F., Bonin P., Jameson I. et Volkman J.K. (2005) Degradation of alkenones and relative compounds during oxic and anoxic incubations of the marine haptophyte Emiliania huxleyi strain CS-57 with bacterial consortia isolated from Camargue (France) microbial mats. Org. Geochem. 36 : 603-618.

6› Rontani J-F., Christodoulou S., Koblizek, M. (2005) GC/MS structural characterization of fatty acids of marine aerobic anoxygenic phototrophic bacteria. Lipids 40 : 97-108.

7› Rontani J-F., Rabourdin A., Pinot F., Kandel S. et Aubert C. (2005) Visible light-induced oxidation of unsaturated components of cutins : a significant process during the senescence of higher plants. Phytochem. 66 : 313-321.

8› Karayanni H, Christaki U, Van Wambeke F, Denis M, Moutin T. (2005 - In press) Influence of ciliated protozoa and heterotrophic nanoflagellates on the fate of primary production in NE Atlantic Ocean. Journal of Geophysical Research, 110, C07S15

9› Gaertner J.C. J.A. Bertrand, D. Samani, A. Souplet (2005). Spatio-temporal organization of demersal assemblages of the East Corsica (Mediterranean Sea). Vie et Milieu (55)2 : 81-89.

10› Maixandeau A, Lefevre D, Karayanni H, Christaki U, Van Wambeke F, Thyssen M, Denis M, Fernandez C, Uitz J, Leblanc K, Queguiner B. (2005) Microbial community production, respiration and structure of the microbial food web of an ecosystem in the Northeastern Atlantic Ocean. Journal of Geophysical Research, 110, C07S17

11› Maixandeau, A., Lefevre, D., Fernandez, C., Sempere, R., Sohrin, R., Ras, J., Van Wambeke, F., Caniaux, G., Queguiner, B. (2005) Mesoscale and seasonal variability of community production and respiration in the northeast Atlantic ocean. Deep Sea Research, part I. 52 : 1663-1676.

12› Marchand D., Marty J-C., Miquel J-C. et Rontani J-F. (2005) Lipids and their degradation products as biomarkers for carbon cycling in the north-western Mediterranean Sea : results from a sediment trap study. Marine Chemistry 95 : 129-147.

13› Panagiotopoulos, C., Sempere, R., (2005) Analytical methods for the determination of sugars in marine samples : A historical perspective and future directions. Limnology and Oceanography Methods, 3 : 419-454.

14› Panagiotopoulos, C., Sempere, R., (2005) The molecular distribution of combined aldoses in sinking particles in eutrophic and oligotrophic oceanic regimes. Marine Chemistry, 95 : 11-49.

15› Rontani J-F. et Aubert C. (2005) Electron ionization mass spectral fragmentation of cholestane-3,4,5-triol and cholestane-3,5,6-triol bis- and tris-trimethylsilyl derivatives. Rapid Commun. Mass Spectrom. 19 : 1921-1927.

16› Sohrin, R., Sempere, R., (2005) Seasonal variation in total organic carbon in the Northeast Atlantic in 2000-2001. J. Geophys. Res. 110, C10S90.

17› Van der Wielen P. W. J. J., Bolhuis H., Borin S., Daffonchio D., Corselli C., Giuliano L., D’Auria G., de Lange G. J., Huebner A., Varnavas S. P., Thomson J., Tamburini C., Marty D., McGenity T. J., Timmis K. N. & BioDeep Scientific Party (2005). The enigma of prokaryotic life in deep hypersaline anoxic basins. Science 307 : 121-123.

18› Cravo-Laureau C., Grossi V., Raphel D., Matheron R., Hirschler-Réa A., (2005) Anaerobic n-alkane metabolism by a sulfate-reducing bacterium, Desulfatibacillum aliphaticivorans strain CV2803T. Applied and Environmental Microbiology 71 : 3458-3467.

19› Zhou L., G. Gregori, J. M. Blackman, J. P. Robinson and B. L. Wanner (2005) Stochastic activation of the response regulator PhoB by noncognate histidine kinases. In : Yearbook Bioinformatics 2004, R. Hofestädt (ed.), pp. 25-38. Magdeburg : IMBio, Informationsmanagement in der Biotechnologie e.V.

20› Mante C., J.P. Durbec and J.C. Dauvin (2005) A functional Data-Analytic approach to the classification of species according to their spatial dispersion. Application to a marine macrobenthic community from the Bay of Morlaix (western English Channel). Journal of Applied Statistics 32(8).

21› Karayanni H., Christaki U., Van Wambeke F., Denis M., & Moutin T (2005 - In press) Influence of ciliated protozoa and heterotrophic nanoflagellates on the fate of primary production in the northeast Atlantic Ocean. Journal of Geophysical Research 10 : C07S15

22› Goutx M., Guigue, C., Leblond N., Desnues A., Dufour, A., Aritio D., and C. Guieu (2005). Particle flux in the North-East Atlantic Ocean during the POMME experiment (2001) : Results from Mass, Carbon, Nitrogen and lipid biomarkers from the drifting sediment traps. Journal of Geophysical Research (110, C07S20, doi:10.1029/2004JC002749).

23› Van den Brink D.M., Van Miert J.N.I., Dacremont G., Rontani J-F. et Wanders R.J.A. (2005) Characterization of the final step in the conversion of phytol into phytanic acid. J. Biol. Chem. 280 : 26838-26844.

24› Rontani J-F. (2005) Importance of visible light-induced photodegradation processes in the north western Mediterranean Sea. Dans : The Handbook of Environmental Chemistry, Water Pollution, vol. 5, Springer Verlag, Heidelberg, pp. 297-317.

25› Mazella,N., Syakti,A.D., Molinet, J., Gilewicz, M., Doumenq,P., Artaud, J., Bertrand, J.C. (2005) Effects of crude oil on phospholipids fatty acid composition of marine hydrocarbon degraders : estimation of the bacterial membrane fluidity ; Environmental Research 97 : 300-311.

26› J.P. Robinson, B. Rajwa, G. Gregori, J. Jones and V. Patsekin (2005). Multispectral cytometry of single bio-particles using a 32-channel detector. Proceedings of SPIE — Volume 5692, Advanced Biomedical and Clinical Diagnostic Systems III, Tuan Vo-Dinh, Warren S. Grundfest, David A. Benaron, Gerald E. Cohn, Editors : 359-365.

27› B. Rajwa, W. Ahmed, M. Venkatapathi, G. Gregori, F. Jin, J. Soos, S. Trivedi and J. P. Robinson (2005). AOTF-based system for image cytometry. Proceedings of SPIE — Volume 5694, Spectral Imaging : Instrumentation, Applications, and Analysis III, Gregory H. Bearman, Anita Mahadevan-Jansen, Richard M. Levenson, Editors : 16-23.

28› Thyssen M., Lefevre D., Caniaux G., Ras J., Dugrais L., Fernandez Ibanez C., Denis M. (2005) Spatial distribution of heterotrophic bacteria in the North East Atlantic (POMME study area) during Spring 2001. J. Geophys. Res, 110 : C07S16.

29› Maixandeau A., Lefevre D., Karayanni H., Christaki U., Van Wambeke F., Thyssen M., Denis M., Fernández I. C., Uitz J. and Quéguiner B. (2005) Microbial community production, respiration and structure of the microbial food web of an ecosystem in the Northeastern Atlantic Ocean. J. Geophys. Res, 110 : C07S17.

30› Bonin P., Cravo-laureau C., Michotey V. & Hirschler-Réa A. (2005). Hydrocarbon biodegrading anaerobic bacteria : an overview. Special issue Matbiopol project. Ophélia.

31› Goregues C., Michotey V. & Bonin P. (2005). Isolation of hydrocarbonoclastic denitrifying bacteria from Berre microbial mats. Special issue Matbiopol project. Ophélia.

32› Goregues C, Michotey V & Bonin P. (2005). Molecular, biochemical and physiological approaches to understand the ecology of denitrification. Microbiol Ecol.

33› Gaertner J.C., J. A. Bertrand, L. Gil de Sola, J.P. Durbec, E. Ferrandis, A. Souplet (2005). Large spatial scale variation of demersal fish assemblages structureon the continental shelf of the NW Mediterranean Sea. Marine Ecology Progress Series 297 : 245-257.

34› Lopez-Cortes, A., Bursakov, S, Figueiredo, A., Thapper, A., Todorovic, S., Moura, J., Ollivier, B., Moura, I. and Fauque, G. (2005). Purification and preliminary characterization of tetraheme cytochrome c3 and adenylyl sulphate rteductase from the peptidolytic sulphate-reducing bacterium Desulfovibrio aminophilus. DSM 12254. Bioinorganic Chemistry and Applications, 3, 81-91.

35› R. Bravo de la Parra, J.-C. Poggiale (2005), Theoretical ecology and mathematical modelling : Problems and methods, Ecological Modelling, 188, (1), 1-2

36› E. Michaud, G. Desrosiers, F. Mermillod-Blondin, B. Sundby, G. Stora (2005). The functional group approach to bioturbation : The effects of biodiffusers and gallery-diffusers of the Macoma balthica community on sediment oxygen uptake. Journal of Experimental Marine Biology and Ecology, 326 : 77-88.

37› Poggiale J-C., Auger P., Nerini D., Mante C. & Gilbert F. (2005). Global production increased by spatial heterogeneity in a population dynamics model. Acta Biotheoretica, 53 : 359-370.

38› S. Dufour, G. Desrosiers, B. Long, P. Lajeunesse, M. Gagnoud, J. Labrie, P. Archambault, and G. Stora ( 2005) . A new method for three_dimensional visualization and quantification of biogenic structures in aquatic sediments using axial tomodensitometry. Limnol. Oceanogr. : Methods 3, 2005, 372-380.

39› Ferré L., Yao A.F (2005) Smoothed Functional Inverse Regression. Statistica Sinica, 15(3) : 665-683.