Publications 2008 du LMGEM

2008

1› de Mesmay R., Metzger P., Grossi V., Derenne S. (2008).  Mono- and dicyclic unsaturated triterpenoid hydrocarbons from sediments of Lake Masoko (Tanzania) widely extending the botryococcene family. Organic Geochemistry.  in revision

2› Grossi V., de Mesmay R., Galtayries A., Raphel D., Derenne S. (2008). Artificial formation of medium- and long-chain 1-haloalkanes during pyrolysis of polar geomacromolecules. Organic Geochemistry. in revision

3> Tamburini C., Goutx M., Guigue C., Garel M., Lefèvre D., Charrière B. Sempéré R.,Pépa S., Peterson M. L., Wakeham S., Lee C. (2008). Novel technique to simulate particles falling through the water column: Evaluation of pressure effects on organic matter mineralization by prokaryotes. Deep-Sea Research II, in revision

4> Moriceau B., Goutx M., Guigue C., Lee C., Amstrong R., Duflos M., Tamburini C., Charrière B., Ragueneau O. (2008). Si-C interactions during degradation of the diatom Skeletonema costatum. Deep-Sea Research II, in revision.

5> Rontani J-F. (2008) Photooxidative and autoxidative degradation of lipid components during the senescence of phototrophic organisms. Phytochemistry Research Progress, Nova Science Publishers (Sous presse).

6> Rontani J-F., Nassiry M., Guasco S., Mouzdahir A. et Bonin P. (2008) Aerobic metabolism of vitamin E by marine bacteria: interactions with free radical oxidation (autoxidation) processes. Org. Geochem. (Sous presse).

7> Obernosterer I, Christaki U, Lefèvre D, Catala P, Van Wambeke F and Lebaron P. (2008). Rapid bacterial mineralization of organic carbon produced during a phytoplankton bloom induced by natural iron fertilization in the Southern Ocean. Deep-Sea Research, in press.

8> Christaki U, Obernosterer I, Van Wambeke F, Veldhuis M, Garcia N. (2008). Microbial food web structure in a naturally iron fertilized area Southern Ocean (Kerguelen Plateau). Deep Sea Research, in press

9> Van Wambeke F, Obernosterer I, Moutin T, Duhamel S, Ulloa O, and Claustre H. (2008).  Heterotrophic bacterial production in the eastern South Pacific: longitudinal trends and coupling with primary production. Biogeosciences, in press.

10> Bonnet S, Guieu C, Bruyant F, Prasil O, Van Wambeke F, Raimbault P, Grob C, Moutin T, Gorbunov M, Zehr JP, Masquelier S, Garczareck L, and Claustre (2008).  H. Nutrients limitation of primary productivity in the Southeast Pacific (BIOSOPE cruise). Biogeosciences, in press.

11> Bonilla-Findji O., Malits A., Lefèvre D., Rochelle-Newall E., Lemée R., Weinbauer M. G., Gattuso J.P. (2008). Viral effects on bacterial respiration, production and growth efficiency: Consistent trends in the Southern Ocean and the Mediterranean Sea. Deep-Sea Research, in press.

12>  Carlotti F., Thibault-Botha D., Nowaczyk A, Lefèvre D. (2008). Zooplankton Community structure, biomass and role in carbon transformation during the second half of a phytoplankton bloom on the eastern part of the Kerguelen plateau (January –February 2005). Deep-Sea Research, in press.

13> Lefèvre D., Guigue C. and Obernosterer I (2008). The metabolic balance during a phytoplankton bloom induced by natural iron fertilisation in the Southern Ocean (Kerguelen Plateau). Deep-Sea Research, in press.

14> Nogaro G., Charles F., Braga de Mendoga Jr J., Mermillot-Bloudin F., Stora G., François-Carcaillet F. (2008). Food supply impacts sediments reworking by Nereis diversicolor. Hydrobiologia (598): 403-408. DOI 10.2007/s10750-007-9135-9

15> Sempéré, R., Tedetti, M., Panagiotopoulos, C., Charrière, B., and Van Wambeke, F. (2008). Distribution and bacterial availability of dissolved neutral sugars in the South East Pacific, Biogeosciences, 5, 1165-1173.

16> Danovaro R., Dell'Anno A., Corinaldesi C., Magagnini M., Noble R., Tamburini C., Weinbauer M. (2008). Major viral impact on the functioning of benthic deep-sea ecosystems. Nature, 454 (7208): 1084-1087.

17>  Gaertner J.C., Taquet M., Dagorn L., Mérigot B., Aumeeruddy R., Sancho G., Itano D., 2008. Visual censuses around drifting fish aggregating devices (FADs): a new approach for assessing the diversity of fish in open-ocean waters. Marine Ecology Progress Series, 366: 175-186.

18> Haouri O., Fardeau M.L., Cayol J.L., Fauque G., Casiot C., Elbaz-Poulichet F.,Hamdi M., Ollivier B. Thermodesulfovibrio hydrogenophilus sp. nov., a new thermophilic sulphate-reducing bacterium isolated from a Tunisian hot spring. Systematic and Applied Microbiology (2008), 31, 38-42.

19> Correia C., Besson S., Brondino C.D.,  Gonzalez P.J., Fauque G., Lampreia J., Moura J., Moura J.J.G. Biochemical and spectroscopic characterization of the membrane-bound nitrate reductase from Marinobacter hydrocarbonoclasticus 617. Journal of Biological Inorganic Chemistry (2008), 13,1321-1333.

20> Thyssen M., Tarran G.A., Zubkov M., Holland R.J., Gregori G.,  Burkill P.H., Denis M. (2008) The emergence of automated high frequency flow cytometry: revealing temporal and spatial phytoplankton variability. Journal Plankton Res 30 (3), 333-343.

21> Rakotomalala L., Studach L., Wang W., Grégori G., Hullinger R.L., Andrisani O. (2008) Hepatitis B virus X protein increases the Cdt 1 to geminin ratio inducing DNA re-replication and polyploidy. J. Biol. Chem, (sous-presse)

22> Duhamel S., Grégori G., Van-wambeke F., Mauriac R., Nedoma J. (2008) A method for analyzing phosphatase activity in aquatic bacteria at the single cell level using flow cytometry.. Journal of Microbiological Methods, 75:269-278

23> Duhamel S., Grégori G., Van-wambeke F., Nedoma J. (2008) Detection of extracellular phosphatase activity at the single cell level by enzyme-labelled fluorescence and flow cytometry: the importance of time kinetics in ELFA labelling. Cytometry (sous-presse)

24> Tedetti, M., Joux, F.,Charrière, B., Mopper, K., Sempéré, R., 2008/ (In Press)/. /Contrasting effects of solar radiation and nitrates on the bioavailability of DOM to marine bacteria./ Journal of Photochemistry and Photobiology A: Chemistry.

25> Abboudi, M., Mattalana, S., Rontani, J., Sempéré, R., Joux, F., (2008) /Physiological Alteration of the Marine Bacterium Vibrio angustum S14 Exposed to Simulated Sunlight During Growth./ Cur. Microbiol., 10.1007/s00284-008-9214-9.

26> Belviso S., Bopp L., Mosseri J., Tedetti M., Garcia N., Griffiths B., Joux F., Obernosterer I., Uitz J., Veldhuis M. (2008). Effect of natural iron fertilisation on the distribution of DMS and DMSP in the Indian sector of the Southern Ocean. Deep-Sea Research II (55): 893-900.

 27> Urios, L., Michotey, V., Intertaglia, L., Lesongeur, F., Lebaron, P.(2008)Nisaea denitrificans gen. nov., sp. nov. and Nisaea nitritireducens sp. nov., two novel members of the class Alphaproteobacteria from the Mediterranean Sea. Int J Syst Evol Microbiol. 58:2336-41.

28> Minjeaud, L., Bonin, P., Michotey, V. (2008) Nitrogen fluxes from marine sediments: quantification of the associated co-occurring bacterial processes. Biogeochemistry; DOI 10.1007/s10533-008-9241-4.

 29> Thyssen M., Mathieu D., Garcia N., Denis M. (2008). Short-term variation of the phytoplankton assemblage in the bay of Marseille (France) monitored by in situ flow cytometry. Journal of Plankton Research, 30: 1027 - 1040.

30> Karayanni H., Christaki U., Van Wambeke F., Thyssen M., Denis M.(2008).^  Heterotrophic nanoflagellate and ciliate bacterivorous activity and growth in  oceanic waters: a seasonal study at mesoscale in NE Atlantic. Aquatic Microbial Ecology, 51:169-181.

 31> Letourneur Y., Gaertner J.C, Durbec J.P, Jessu M.E. (2008). Effects of geomorphological zones, reefs and seasons on coral reef fish communities of Réunion Island, Mascarene Archipelago, SW Indian Ocean. Estuarine, Coastal and Shelf Science (77): 697-709 .

32> Bigot L., Grémare A., Amouroux J.M., Frouin P., Maire O., Gaertner J.C. (2008). Assessment of the ecological quality status of soft-bottoms in Réunion Island (tropical Southwest Indian Ocean) using AZTI Marine Biotic Indices. Marine Pollution Bulletin (56) 4: 704-722

 33> Poggiale, J.C.,Gauduchon, M.,Auger, P., (2008). Enrichment Paradox Induced by Spatial Heterogeneity in a Phhytoplankton - Zooplankton System. Mathematical Models of Natural Phenomena, 3 (3), 87-102

 34> Mermillod, F.,Poggiale, J.C.,Tolla, C.,Thuillier, W.,Auger, P.,Creuze, M. (2008). Modelling the impact of tubicid worms (Oligochaeta) on oxygen concentrations in hyporheic sediments: importance of vertical distributions. Fundamentals and Applied Limnology, 172 (2), 135-145

 35/ Auger, P.,Bravo, R.,Poggiale, J.C.,Sanchez, E.,Sanz, L., (2008). Aggregation methods in dynamical systems and applications in population and community dynamics. Physics of Life Review, 5, 79-105

 36/ Pischedda, L.,Poggiale, J.C.,Cuny, P.,Gilbert, F., (2008) Imaging Oxygen Distribution in Marine Sediments. The Importance of Bioturbation and Sediment Heterogeneity. Actabiotheoretica, 56, 123-135

 37/ Auger, P., Bravo de la Parra, R., Poggiale, J.C., Sanchez, E. and Nguyen-Huu, T. (2008). « Aggregation of Variables and Applications to Population Dynamics ». In_Structured Population Models in Biology and Epidemiology.

 38/ Raimbault P., N. Garcia, F. Cerrutti, 2008. Distribution of inorganic and organic nutrients in the South Pacific Ocean. Evidence for long-term accumulation of organic matter in nitrogen-depleted waters. Biogeosciences, 5, 281-298.

39/ Raimbault P., N. Garcia (2008). Evidence for efficient regenerated production and dinitrogen fixation in nitrogen-depleted waters of the South Pacific Ocean: Impact on new and export production estimates. Biogeosciences., 5, 323-338.

40/ Gouze E., Raimbault. P., Garcia N., Picon P., Bernard G., 2008 Nutrient dynamics and primary production in the eutrophic Berre Lagoon (Mediterranean, France). Transitional Waters Bulletin, 2(2008), 17-4

41/ Gouze E., Raimbault. P., Garcia N., Bernard G, Picon P., 2008 Nutrients and suspended matter discharge by tributaries to the Berre Lagoon (France): floods contribution to matter budget. C.R. Geosciences, 340: 233-244.

42/ Bourguet N., M. Goutx, J.F. Ghiglione, M. Pujo-Pay, G. Mével, A. Momzikoff, L. Mousseau, C. Guigue, N. Garcia N., P. Raimbault, R. Pete, L. Oriol, D. Lefèvre, 2008. Lipid biomarkers and bacterial lipase activities as indicators of organic matter and bacterial. dynamics in contrasted regimes at the Dyfamed site, NW Mediterranean. /Deep–Sea Research II /(2008), doi:10.1016/j.dsr2.2008.11.034

43/ Rontani J-F., Aubert C. (2008) Hydrogen and trimethylsilyl transfers during EI mass spectral fragmentations of hydroxycarboxylic and oxocarboxylic acid trimethylsilyl derivatives. Journal of the American Society of Mass Spectrometry 19: 66-75.

44/ Rontani J-F., Harji R., Guasco S., Prahl F.G., Volkman J.K., Bhosle N.B. et Bonin P. (2008) Degradation of alkenones by aerobic heterotrophic bacteria: selective or not? Organic Geochemistry 39: 34-51.

45/ Rontani J-F. et Wakeham S.G. (2008) Alteration of alkenone unsaturation ratio with depth in Black Sea: potential roles of stereomutation and aerobic biodegradation. Organic Geochemistry 39: 1259-1268.

 46/ Nassiry M., Aubert, C., Mouzdahir A., Rontani J-F. (2008) Generation of isoprenoid compounds and notably of prist-1-ene through photo- and autoxidative degradation of vitamin E. Organic Geochemistry 40: 38-50. 

 47/ Christodoulou S., Marty J-C., Miquel J-C., Volkman J.K., Rontani J-F. (2008)  Use of lipids and their degradation products as biomarkers for carbon cycling in the north-western Mediterranean Sea. Marine Chemistry (Sous presse).

 48/ Rontani J-F., Zabeti N., Wakeham S.G. (2008) The fate of marine lipids: biotic vs. abiotic degradation of particulate sterols and alkenones in the Northwestern Mediterranean Sea. Marine Chemistry (Sous presse).

 49/ Rontani J-F., Koblizek M. (2008) Regiospecific Enzymatic Oxygenation of cis-Vaccenic Acid in the Marine Phototrophic Bacterium Erythrobacter sp. strain MG3. Lipids 43: 1065-1074.

 50/ Rontani J-F. (2008) Production of wax esters by bacteria. Dans: Microbiology of Hydrocarbons, Oils, Lipids and derived compounds, K. Timmiz (Ed.), Springer Verlag (Sous presse)